| File Name | Download Link | Description |
|---|---|---|
| OrthoDB_groups_12species.txt | Download | Orthologous groups across 12 yeast species |
| File Name | Download Link | Description |
|---|---|---|
| Calb1.ctss | Download | Raw TSS data obtained from Candida albicans grown in YPD medium replicate 1 |
| Calb2.ctss | Download | Raw TSS data obtained from Candida albicans grown in YPD medium replicate 2 |
| CalbconsensusClusters.txt | Download | Core promoter data obtained from Candida albicans grown in YPD medium |
| Genome | ||
| GCF_000182965.3_ASM18296v3_genomic.fna | Download | Reference genome sequence for Candida albicans from NCBI |
| GCF_000182965.3_ASM18296v3_genomic.gff | Download | Annotations for Candida albicans from NCBI |
| Nucleosome_Occupancy | ||
| Field_2009_PMID_19252487_Calb.bw | Download | Nuclesome occupancy data for Candida albicans from Field_2009_PMID_19252487 |
| File Name | Download Link | Description |
|---|---|---|
| Klac1.ctss | Download | Raw TSS data obtained from Kluyveromyces lactis grown in YPD medium replicate 1 |
| Klac2.ctss | Download | Raw TSS data obtained from Kluyveromyces lactis grown in YPD medium replicate 2 |
| KlacconsensusClusters.txt | Download | Core promoter data obtained from Kluyveromyces lactis grown in YPD medium |
| Genome | ||
| GCF_000002515.2_ASM251v1_genomic.fna | Download | Reference genome sequence for Kluyveromyces lactis from NCBI |
| GCF_000002515.2_ASM251v1_genomic.gff | Download | Annotations for Kluyveromyces lactis from NCBI |
| File Name | Download Link | Description |
|---|---|---|
| Lklu1.ctss | Download | Raw TSS data obtained from Lachancea kluyveri grown in YPD medium replicate 1 |
| Lklu2.ctss | Download | Raw TSS data obtained from Lachancea kluyveri grown in YPD medium replicate 2 |
| LkluconsensusClusters.txt | Download | Core promoter data obtained from Lachancea kluyveri grown in YPD medium |
| Genome | ||
| Lkluyveri_annotations.gff | Download | Reference genome sequence for Lachancea kluyveri from YGOB |
| Lkluyveri_sequence.fsa | Download | Annotations for Lachancea kluyveri from YGOB |
| File Name | Download Link | Description |
|---|---|---|
| Lwal1.ctss | Download | Raw TSS data obtained from Lachancea waltii grown in YPD medium replicate 1 |
| Lwal2.ctss | Download | Raw TSS data obtained from Lachancea waltii grown in YPD medium replicate 2 |
| LwalconsensusClusters.txt | Download | Core promoter data obtained from Lachancea waltii grown in YPD medium |
| Genome | ||
| Lwaltii_annotations.gff | Download | Annotations for Lachancea waltii from YGOB |
| Lwaltii_sequence.fsa | Download | Reference genome sequence for Lachancea waltii from YGOB |
| File Name | Download Link | Description |
|---|---|---|
| Ncas1.ctss | Download | Raw TSS data obtained from Naumovozyma castellii grown in YPD medium replicate 1 |
| Ncas2.ctss | Download | Raw TSS data obtained from Naumovozyma castellii grown in YPD medium replicate 2 |
| NcasconsensusClusters.txt | Download | Core promoter data obtained from Naumovozyma castellii grown in YPD medium |
| Genome | ||
| GCF_000237345.1_ASM23734v1_genomic.gff | Download | Annotations for Naumovozyma castellii from NCBI |
| Ncastellii_GCF_000237345.1_ASM23734v1_genomic.fna | Download | Reference genome sequence for Naumovozyma castellii from NCBI |
| File Name | Download Link | Description |
|---|---|---|
| Sbay1.ctss | Download | Raw TSS data obtained from Saccharomyces bayanus grown in YPD medium replicate 1 |
| Sbay2.ctss | Download | Raw TSS data obtained from Saccharomyces bayanus grown in YPD medium replicate 2 |
| SbayconsensusClusters.txt | Download | Core promoter data obtained from Saccharomyces bayanus grown in YPD medium |
| Genome | ||
| Sbay.Lu.gtf | Download | Annotations for Saccharomyces bayanus |
| Sbayanus_GCA_000167035.1_ASM16703v1_genomic.fna | Download | Reference genome sequence for Saccharomyces bayanus from NCBI |
| File Name | Download Link | Description |
|---|---|---|
| ScerArrestconsensusClusters.txt | Download | Core promoter data obtained from Saccharomyces cerevisiae under cell division arrest |
| ScerDDconsensusClusters.txt | Download | Core promoter data obtained from Saccharomyces cerevisiae under DNA damage |
| ScerDSAconsensusClusters.txt | Download | Core promoter data obtained from Saccharomyces cerevisiae after Diauxia shift |
| ScerGalconsensusClusters.txt | Download | Core promoter data obtained from Saccharomyces cerevisiae with Galactose as carbon source |
| ScerGlcconsensusClusters.txt | Download | Core promoter data obtained from Saccharomyces cerevisiae under 16% glucose concentration |
| ScerH2O2consensusClusters.txt | Download | Core promoter data obtained from Saccharomyces cerevisiae under oxidative stress |
| ScerHSconsensusClusters.txt | Download | Core promoter data obtained from Saccharomyces cerevisiae after 30 heat shock replcate 1 |
| ScerNaClconsensusClusters.txt | Download | Core promoter data obtained from Saccharomyces cerevisiae under osmotic stress |
| ScerYPDconsensusClusters.txt | Download | Core promoter data obtained from Saccharomyces cerevisiae in log phase under YPD medium |
| Genome | ||
| Saccharomyces_cerevisiae.R64-1-1.92.gff3 | Download | Annotations for Saccharomyces cerevisiae from SGD |
| Saccharomyces_cerevisiae_Lin.gff | Download | Revised annotations for Saccharomyces cerevisiae by Zhenguo Lin`s lab |
| genome.fa | Download | Reference genome sequence for Saccharomyces cerevisiae from SGD |
| ctss | ||
| ScerArrest.1.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae under cell division arrest replicate 1 |
| ScerArrest.2.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae under cell division arrest replicate 2 |
| ScerDD.1.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae under DNA damage replicate 1 |
| ScerDD.2.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae under DNA damage replicate 2 |
| ScerDSA.1.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae after Diauxia shift replicate 1 |
| ScerDSA.2.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae after Diauxia shift replicate 2 |
| ScerGal.1.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae with Galactose as carbon source replicate 1 |
| ScerGal.2.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae with Galactose as carbon source replicate 2 |
| ScerGlc.1.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae under 16% glucose concentration replicate 1 |
| ScerGlc.2.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae under 16% glucose concentration replicate 2 |
| ScerH2O2.1.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae under oxidative stress replicate 1 |
| ScerH2O2.2.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae under oxidative stress replicate 2 |
| ScerHS.1.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae after 30 heat shock replcate 1 |
| ScerHS.2.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae after 30 heat shock replcate 2 |
| ScerNaCl.1.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae under osmotic stress replicate 1 |
| ScerNaCl.2.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae under osmotic stress replicate 2 |
| ScerYPD.1.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae in log phase under YPD medium replicate 1 |
| ScerYPD.2.ctss | Download | Raw TSS data obtained from Saccharomyces cerevisiae in log phase under YPD medium replicate 2 |
| other_tracks | ||
| Doris_et_al_2018 | ||
| GSM3189539_WT-37C-1_tss-seq-spikenorm-minus.bw | Download | Minus Strand TSS-seq of wild type after an 80 minute shift from 30C to 37C from Doris et al. 2018 |
| GSM3189539_WT-37C-1_tss-seq-spikenorm-plus.bw | Download | Plus Strand TSS-seq of wild type after an 80 minute shift from 30C to 37C from Doris et al. 2018 |
| GSM3189539_WT-37C-1_tss-seq-spikenorm.bw | Download | Merged TSS-seq of wild type after an 80 minute shift from 30C to 37C from Doris et al. 2018 |
| GSM3189540_WT-37C-2_tss-seq-spikenorm-minus.bw | Download | Minus Strand TSS-seq of wild type after an 80 minute shift from 30C to 37C from Doris et al. 2018 |
| GSM3189540_WT-37C-2_tss-seq-spikenorm-plus.bw | Download | Plus Strand TSS-seq of wild type after an 80 minute shift from 30C to 37C from Doris et al. 2018 |
| GSM3189540_WT-37C-2_tss-seq-spikenorm.bw | Download | Merged TSS-seq of wild type after an 80 minute shift from 30C to 37C from Doris et al. 2018 |
| GSM3189541_spt6-1004-37C-1_tss-seq-spikenorm-minus.bw | Download | Minus Strand TSS-seq of spt6-1004 mutant at 37C from Doris et al. 2018 |
| GSM3189541_spt6-1004-37C-1_tss-seq-spikenorm-plus.bw | Download | Plus Strand TSS-seq of spt6-1004 mutant at 37C from Doris et al. 2018 |
| GSM3189541_spt6-1004-37C-1_tss-seq-spikenorm.bw | Download | Merged TSS-seq of spt6-1004 mutant at 37C from Doris et al. 2018 |
| GSM3189542_spt6-1004-37C-2_tss-seq-spikenorm-minus.bw | Download | Minus StrandTSS-seq of spt6-1004 mutant at 37C from Doris et al. 2018 |
| GSM3189542_spt6-1004-37C-2_tss-seq-spikenorm-plus.bw | Download | Plus Strand TSS-seq of spt6-1004 mutant at 37C from Doris et al. 2018 |
| GSM3189542_spt6-1004-37C-2_tss-seq-spikenorm.bw | Download | Merged TSS-seq of spt6-1004 mutant at 37C from Doris et al. 2018 |
| GSM3189543_WT-37C-1_tfiib-chipnexus-libsizenorm-midpoints.bw | Download | TFIIB CHIP-nexus of wild type fom Doris et al. 2018 |
| GSM3189543_WT-37C-1_tfiib-chipnexus-libsizenorm-protection.bw | Download | TFIIB CHIP-nexus of wild type fom Doris et al. 2018 |
| GSM3189543_WT-37C-1_tfiib-chipnexus-libsizenorm.bw | Download | TFIIB CHIP-nexus of wild type fom Doris et al. 2018 |
| GSM3189544_WT-37C-2_tfiib-chipnexus-libsizenorm-midpoints.bw | Download | TFIIB CHIP-nexus of wild type fom Doris et al. 2018 |
| GSM3189544_WT-37C-2_tfiib-chipnexus-libsizenorm-protection.bw | Download | TFIIB CHIP-nexus of wild type fom Doris et al. 2018 |
| GSM3189544_WT-37C-2_tfiib-chipnexus-libsizenorm.bw | Download | TFIIB CHIP-nexus of wild type fom Doris et al. 2018 |
| GSM3189545_spt6-1004-37C-1_tfiib-chipnexus-libsizenorm-midpoints.bw | Download | TFIIB CHIP-nexus of spt6-1004 mutant fom Doris et al. 2018 |
| GSM3189545_spt6-1004-37C-1_tfiib-chipnexus-libsizenorm-protection.bw | Download | TFIIB CHIP-nexus of spt6-1004 mutant fom Doris et al. 2018 |
| GSM3189545_spt6-1004-37C-1_tfiib-chipnexus-libsizenorm.bw | Download | TFIIB CHIP-nexus of spt6-1004 mutant fom Doris et al. 2018 |
| GSM3189546_spt6-1004-37C-2_tfiib-chipnexus-libsizenorm-midpoints.bw | Download | TFIIB CHIP-nexus of spt6-1004 mutant fom Doris et al. 2018 |
| GSM3189546_spt6-1004-37C-2_tfiib-chipnexus-libsizenorm-protection.bw | Download | TFIIB CHIP-nexus of spt6-1004 mutant fom Doris et al. 2018 |
| GSM3189546_spt6-1004-37C-2_tfiib-chipnexus-libsizenorm.bw | Download | TFIIB CHIP-nexus of spt6-1004 mutant fom Doris et al. 2018 |
| GSM3189547_WT-37C-1-netseq-libsizenorm-5end.bw | Download | NET-seq of wild type from Doris et al. 2018 |
| GSM3189548_WT-37C-2-netseq-libsizenorm-5end.bw | Download | NET-seq of wild type from Doris et al. 2018 |
| GSM3189549_spt6-1004-30C-1-netseq-libsizenorm-5end.bw | Download | NET-seq of spt6-1004 mutant at 30C from Doris et al. 2018 |
| GSM3189550_spt6-1004-30C-2-netseq-libsizenorm-5end.bw | Download | NET-seq of spt6-1004 mutant at 30C from Doris et al. 2018 |
| GSM3189551_spt6-1004-37C-1-netseq-libsizenorm-5end.bw | Download | NET-seq of spt6-1004 mutant at 37C from Doris et al. 2018 |
| GSM3189552_spt6-1004-37C-2-netseq-libsizenorm-5end.bw | Download | NET-seq of spt6-1004 mutant at 37C from Doris et al. 2018 |
| GSM3189553_YPD-1_rnapii-chipnexus-libsizenorm-midpoints.bw | Download | Spt6 ChIP-nexus of wild type rom Doris et al. 2018 |
| GSM3189553_YPD-1_rnapii-chipnexus-libsizenorm-protection.bw | Download | Spt6 ChIP-nexus of wild type rom Doris et al. 2018 |
| GSM3189553_YPD-1_rnapii-chipnexus-libsizenorm.bw | Download | Spt6 ChIP-nexus of wild type rom Doris et al. 2018 |
| GSM3189554_YPD-2_rnapii-chipnexus-libsizenorm-midpoints.bw | Download | Spt6 ChIP-nexus of wild type rom Doris et al. 2018 |
| GSM3189554_YPD-2_rnapii-chipnexus-libsizenorm-protection.bw | Download | Spt6 ChIP-nexus of wild type rom Doris et al. 2018 |
| GSM3189554_YPD-2_rnapii-chipnexus-libsizenorm.bw | Download | Spt6 ChIP-nexus of wild type rom Doris et al. 2018 |
| GSM3189555_YPD-1_spt6-chipnexus-libsizenorm-midpoints.bw | Download | Rpb1 ChIP-nexus of wild type rom Doris et al. 2018 |
| GSM3189555_YPD-1_spt6-chipnexus-libsizenorm-protection.bw | Download | Rpb1 ChIP-nexus of wild type rom Doris et al. 2018 |
| GSM3189555_YPD-1_spt6-chipnexus-libsizenorm.bw | Download | Rpb1 ChIP-nexus of wild type rom Doris et al. 2018 |
| GSM3189556_YPD-2_spt6-chipnexus-libsizenorm-midpoints.bw | Download | Rpb1 ChIP-nexus of wild type rom Doris et al. 2018 |
| GSM3189556_YPD-2_spt6-chipnexus-libsizenorm-protection.bw | Download | Rpb1 ChIP-nexus of wild type rom Doris et al. 2018 |
| GSM3189556_YPD-2_spt6-chipnexus-libsizenorm.bw | Download | Rpb1 ChIP-nexus of wild type rom Doris et al. 2018 |
| GSM3189557_WT-37C-1-mnase-midpoint-spikenorm.bw | Download | MNase-seq of wild type from Doris et al. 2018 |
| GSM3189557_WT-37C-1-mnase-midpoint_smoothed-spikenorm.bw | Download | MNase-seq of wild type from Doris et al. 2018 |
| GSM3189557_WT-37C-1-mnase-wholefrag-spikenorm.bw | Download | MNase-seq of wild type from Doris et al. 2018 |
| GSM3189558_spt6-1004-37C-1-mnase-midpoint-spikenorm.bw | Download | MNase-seq of spt6-1004 mutant from Doris et al. 2018 |
| GSM3189558_spt6-1004-37C-1-mnase-midpoint_smoothed-spikenorm.bw | Download | MNase-seq of spt6-1004 mutant from Doris et al. 2018 |
| GSM3189558_spt6-1004-37C-1-mnase-wholefrag-spikenorm.bw | Download | MNase-seq of spt6-1004 mutant from Doris et al. 2018 |
| GSM3189559_spt6-1004-37C-2-mnase-midpoint-spikenorm.bw | Download | MNase-seq of spt6-1004 mutant from Doris et al. 2018 |
| GSM3189559_spt6-1004-37C-2-mnase-midpoint_smoothed-spikenorm.bw | Download | MNase-seq of spt6-1004 mutant from Doris et al. 2018 |
| GSM3189559_spt6-1004-37C-2-mnase-wholefrag-spikenorm.bw | Download | MNase-seq of spt6-1004 mutant from Doris et al. 2018 |
| H3-Methylation | ||
| Kirmizis_2007_Rap1_mutant_histone_H3R2A.merge.bw | Download | Rap1 mutant methylation at histone H3R2A from Kirmizis 2017 |
| Kirmizis_2007_Rap1_wildtype_histone_H3.merge.bw | Download | Rap1 wildtype methylation at histone H3R2A from Kirmizis 2017 |
| Kirmizis_2007_Sir2_mutant_histone_H3R2A.merge.bw | Download | Sir2 mutant methylation at histone H3R2A from Kirmizis 2017 |
| Kirmizis_2007_Sir2_wildtype_histone_H3.merge.bw | Download | Sir2 wildtype methylation at histone H3R2A from Kirmizis 2017 |
| Kirmizis_2007_histone_H3K4me1.merge.bw | Download | Histone methylation at H3R2me1 from Kirmizis 2007 |
| Kirmizis_2007_histone_H3K4me2.merge.bw | Download | Histone methylation at H3R2me2 from Kirmizis 2007 |
| Kirmizis_2007_histone_H3K4me3.merge.bw | Download | Histone methylation at H3R2me3 from Kirmizis 2007 |
| Kirmizis_2007_histone_H3R2me2a.merge.bw | Download | Histone methylation at H3R2me2a from Kirmizis 2007 |
| Nucleosome_Occupancy | ||
| Field_2009_PMID_19252487_GAL.bw | Download | Nuclesome occupancy data obtained from Saccharomyces cerevisiae in YPGal condition from Field 2009 |
| Field_2009_PMID_19252487_YPD.bw | Download | Nuclesome occupancy data obtained from Saccharomyces cerevisiae in YPD condition from Field 2009 |
| PWM-predicted_binding_site | ||
| Grant_2011_PMID_21330290.README | Download | |
| SGD_PWM_predicted_binding_sites_p0.00001.gff3 | Download | PWM predicted binding site p0.00001 from Grant 2011 |
| SGD_PWM_predicted_binding_sites_p0.0001.gff3 | Download | PWM predicted binding site p0.0001 from Grant 2011 |
| SGD_PWM_predicted_binding_sites_p0.001.gff3 | Download | PWM predicted binding site p0.001 from Grant 2011 |
| Prediction_of_DNA_structural_features | ||
| Zhou_2013_PMID_23703209.README | Download | |
| Zhou_2013_minor.bw | Download | Prediction of DNA structural features-minor from Zhou 2013 |
| Zhou_2013_propel.bw | Download | Prediction of DNA structural features-propel from Zhou 2013 |
| Zhou_2013_roll.bw | Download | Prediction of DNA structural features-roll from Zhou 2013 |
| Zhou_2013_twist.bw | Download | Prediction of DNA structural features-twist from Zhou 2013 |
| TATA_elements | ||
| Rhee_2012_PMID_22258509.README | Download | |
| Rhee_2012_TATA_elements_V64.gff3 | Download | TATA elements from Rhee 2012 |
| TFBS_using_ChIP-chip | ||
| Venters_2011_PMID_21329885.README | Download | Transcription factor binding sites from Venters 2011 |
| Venters_2011_PMID_21329885_V53toV64_FDR5_gff3_unmapped_files.tgz | Download | Transcription factor binding sites from Venters 2011 |
| Venters_2011_PMID_21329885_V53toV64_gff3_unmapped_files.tgz | Download | Transcription factor binding sites from Venters 2011 |
| Venters_2011_PMID_21329885_V64_FDR5_gff3_files.tgz | Download | Transcription factor binding sites from Venters 2011 |
| Venters_2011_PMID_21329885_V64_FDR_gff3_files.tgz | Download | Transcription factor binding sites from Venters 2011 |
| Venters_2011_PMID_21329885_V64_gff3_files.tgz | Download | Transcription factor binding sites from Venters 2011 |
| Venters_2011_PMID_21329885_V64_FDR5_gff3_files | ||
| Venters_2011_25.gff3 | Download | Transcription factor binding sites from Venters 2011 |
| Venters_2011_37.gff3 | Download | Transcription factor binding sites from Venters 2011 |
| TL-seq_and_TATL-seq_study_of_5UTRs | ||
| Arribere_2013_GSE39074_TATL-SeqCombined.bw | Download | TSS data from Arribere 2013 |
| Arribere_2013_GSM955198_TL-SeqPlusTAP.bw | Download | TSS data from Arribere 2013 |
| Arribere_2013_GSM955199_TL-SeqMinusTAP.bw | Download | TSS data from Arribere 2013 |
| Arribere_2013_PMID_23580730.README | Download | |
| TSS | ||
| Malabat_2015.CTSS.normalized.minus.bw | Download | |
| Malabat_2015.CTSS.normalized.plus.bw | Download | |
| Malabat_2015_YPD.bw | Download | TSS data obtained in YPD condition from Malabat 2015 |
| Pelechano_2013 _Galactose.bw | Download | TSS data obtained in YPGal condition from Pelechano 2013 |
| Pelechano_2013 _YPD.bw | Download | TSS data obtained in YPD condition from Pelechano 2013 |
| Pelechano_2013.gal.CTSS.minus.normalized.bw | Download | |
| Pelechano_2013.gal.CTSS.plus.normalized.bw | Download | |
| Pelechano_2013.ypd.CTSS.minus.normalized.bw | Download | |
| Pelechano_2013.ypd.CTSS.plus.normalized.bw | Download | |
| TSS-seq | ||
| TSS-sequencing.CTSS.bw | Download | TSS data from TSS sequencing |
| Transcriptional_regulator_mapping | ||
| MacIsaac_2006_ChIP_chip_TFBSs_V52toV64_unmapped.txt | Download | Transcriptional regulator mapping by CHIP-seq from Maclsaac 2006 |
| MacIsaac_2006_ChIP_chip_TFBSs_V64.gff3 | Download | Transcriptional regulator mapping by CHIP-seq from Maclsaac 2006 |
| MacIsaac_2006_PMID_16522208.README | Download | |
| Waern_2013_RNA_seq | ||
| Waern_2013_AlphaFactor.gff3 | Download | RNA-seq data obtained under YPD condition with Alpha factor from Waern 2013 |
| Waern_2013_Benomyl.gff3 | Download | RNA-seq data obtained under Benomyl condition from Waern 2013 |
| Waern_2013_Calcofluor.gff3 | Download | RNA-seq data obtained under Calcofluor condition from Waern 2013 |
| Waern_2013_CongoRed.gff3 | Download | RNA-seq data obtained under Congo Red condition from Waern 2013 |
| Waern_2013_DNADamage.gff3 | Download | RNA-seq data obtained under DNA Damage condition from Waern 2013 |
| Waern_2013_GrapeJuice.gff3 | Download | RNA-seq data obtained under Grape Juice condition from Waern 2013 |
| Waern_2013_HeatShock.gff3 | Download | RNA-seq data obtained under Heat Shock condition from Waern 2013 |
| Waern_2013_HighCalcium.gff3 | Download | RNA-seq data obtained under High Calcium condition from Waern 2013 |
| Waern_2013_Hydroxyurea.gff3 | Download | RNA-seq data obtained under Hydroxyurea condition from Waern 2013 |
| Waern_2013_LowNitrogen.gff3 | Download | RNA-seq data obtained under Low Nitrogen condition from Waern 2013 |
| Waern_2013_LowPhosphate.gff3 | Download | RNA-seq data obtained under Low Phosphatee condition from Waern 2013 |
| Waern_2013_OxidativeStress.gff3 | Download | RNA-seq data obtained under Oxidative Stress condition from Waern 2013 |
| Waern_2013_PMID_23390610.README | Download | |
| Waern_2013_Salt.gff3 | Download | RNA-seq data obtained under Salt condition from Waern 2013 |
| Waern_2013_ScGlycerolMedia.gff3 | Download | RNA-seq data obtained under ScGlycerol Media from Waern 2013 |
| Waern_2013_ScMedia.gff3 | Download | RNA-seq data obtained under Sc Media from Waern 2013 |
| Waern_2013_Sorbitol.gff3 | Download | RNA-seq data obtained under Sorbitol condition from Waern 2013 |
| Waern_2013_StationaryPhase.gff3 | Download | RNA-seq data obtained in Stationary Phase from Waern 2013 |
| location_of_TFIIS_RNA_Pol_II_and_III | ||
| Ghavi-Helm_2008_Dst1_RNA_PolIII_SC-L_16C_ChIP_chip_V64.bw | Download | Dst1 mutant RNA PolIII data from Ghavi-Helm 2008 |
| Ghavi-Helm_2008_Dst1_RNA_PolII_SC-L_16C_ChIP_chip_V64.bw | Download | Dst1 mutant RNA PolII data from Ghavi-Helm 2008 |
| Ghavi-Helm_2008_PMID_18628399.README | Download | |
| Ghavi-Helm_2008_WT_RNA_PolIII_YPD_16C_ChIP_chip_V64.bw | Download | Wildtype RNA PolIII data from Ghavi-Helm 2008 |
| Ghavi-Helm_2008_WT_RNA_PolIII_YPD_30C_ChIP_chip_V64.bw | Download | Wildtype RNA PolIII data from Ghavi-Helm 2008 |
| Ghavi-Helm_2008_WT_RNA_PolII_YPD_16C_ChIP_chip_V64.bw | Download | Wildtype RNA PolII data from Ghavi-Helm 2008 |
| Ghavi-Helm_2008_WT_RNA_PolII_YPD_30C_ChIP_chip_V64.bw | Download | Wildtype RNA PolII data from Ghavi-Helm 2008 |
| Ghavi-Helm_2008_WT_TFIIS_SDMPA_30C_ChIP_chip_V64.bw | Download | Wildtype TFIIS data from Ghavi-Helm 2008 |
| Ghavi-Helm_2008_WT_TFIIS_SD_30C_ChIP_chip_V64.bw | Download | Wildtype TFIIS data from Ghavi-Helm 2008 |
| Ghavi-Helm_2008_WT_TFIIS_YPD_30C_ChIP_chip_V64.bw | Download | Wildtype TFIIS data from Ghavi-Helm 2008 |
| Ghavi-Helm_2008_dst1D_RNA_PolIII_YPD_16C_ChIP_chip_V64.bw | Download | dst1D mutant RNA PolIII data from Ghavi-Helm 2008 |
| Ghavi-Helm_2008_dst1D_RNA_PolII_YPD_16C_ChIP_chip_V64.bw | Download | dst1D mutant RNA PolII data from Ghavi-Helm 2008 |
| Ghavi-Helm_2008_dst1_E291A_RNA_PolIII_SC-L_16C_ChIP_chip_V64.bw | Download | dst1 mutant RNA PolIII data from Ghavi-Helm 2008 |
| Ghavi-Helm_2008_dst1_E291A_RNA_PolII_SC-L_16C_ChIP_chip_V64.bw | Download | dst1 mutant RNA PolII data from Ghavi-Helm 2008 |
| Ghavi-Helm_2008_dst1_R200A_RNA_PolIII_SD-L_16C_ChIP_chip_V64.bw | Download | dst1 mutant RNA PolIII data from Ghavi-Helm 2008 |
| Ghavi-Helm_2008_dst1_R200A_RNA_PolII_SC-L_16C_ChIP_chip_V64.bw | Download | dst1 mutant RNA PolII data from Ghavi-Helm 2008 |
| methylated_and_acetylated_histones | ||
| Pokholok_2005_Esa1_vs_WCE_YPD_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_Gcn4_vs_WCE_AA_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_Gcn5_vs_WCE_YPD_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_IgG_control_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_PMID_16122420.README.txt | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_histone_H3K14ac_vs_H3_H2O2_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_histone_H3K14ac_vs_H3_YPD_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_histone_H3K14ac_vs_WCE_YPD_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_histone_H3K36me3_vs_H3_YPD_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_histone_H3K4me1_vs_H3_YPD_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_histone_H3K4me2_vs_H3_YPD_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_histone_H3K4me3_vs_H3_YPD_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_histone_H3K9ac_vs_H3_YPD_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_histone_H3_vs_WCE_H2O2_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_histone_H3_vs_WCE_YPD_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_histone_H4_vs_WCE_YPD_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_histone_H4ac_vs_H3_H2O2_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_histone_H4ac_vs_H3_YPD_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_2005_no_antibody_control_YPD_ChIP_chip_V64.bw | Download | Histone modification data fro Pokholok 2005 |
| Pokholok_et_al_data.sacCer3.xlsx | Download | Histone modification data fro Pokholok 2005 |
| nucleosome_organization | ||
| Mavrich_2008_PMID_18550805.README | Download | |
| Mavrich_2008_PMID_18550805_V64_track_files.zip | Download | Nucleosome organization data from Mavrich 2008 |
| Mavrich_2008_PMID_18550805_V64_track_files | ||
| Mavrich_2008_H3H4_nucleosome_positions_V56toV64_unmapped.txt | Download | Nucleosome organization data from Mavrich 2008 |
| Mavrich_2008_H3H4_nucleosome_positions_V64.gff3 | Download | Nucleosome organization data from Mavrich 2008 |
| Mavrich_2008_H3H4_nucleosome_positions_WC_V56toV64_unmapped.txt | Download | Nucleosome organization data from Mavrich 2008 |
| Mavrich_2008_H3H4_nucleosome_positions_WC_V64.gff3 | Download | Nucleosome organization data from Mavrich 2008 |
| pre-initiaton complexes | ||
| Rhee_2012_PMID_22258509.README | Download |
| File Name | Download Link | Description |
|---|---|---|
| Smik1.ctss | Download | Raw TSS data obtained from Saccharomyces mikatae grown in YPD medium replicate 1 |
| Smik2.ctss | Download | Raw TSS data obtained from Saccharomyces mikatae grown in YPD medium replicate 2 |
| SmikconsensusClusters.txt | Download | Core promoter data obtained from Saccharomyces mikatae grown in YPD medium |
| Genome | ||
| Smikatae_annotations.gff | Download | Annotations for Saccharomyces mikatae from YGOB |
| Smikatae_sequence.fsa | Download | Reference genome sequence for Saccharomyces mikatae from YGOB |
| File Name | Download Link | Description |
|---|---|---|
| Spar1.ctss | Download | Raw TSS data obtained from Saccharomyces paradoxus grown in YPD medium replicate 1 |
| Spar2.ctss | Download | Raw TSS data obtained from Saccharomyces paradoxus grown in YPD medium replicate 2 |
| SparconsensusClusters.txt | Download | Core promoter data obtained from Saccharomyces paradoxus grown in YPD medium |
| Genome | ||
| Spar_CBS432.genome.fa | Download | Reference genome sequence for Saccharomyces paradoxus from NCBI |
| Spar_chr.gff | Download | Annotations for Saccharomyces paradoxus from NCBI |
| File Name | Download Link | Description |
|---|---|---|
| Sjap1.ctss | Download | Raw TSS data obtained from Schizosaccharomyces japonicus grown in YPD medium replicate 1 |
| Sjap2.ctss | Download | Raw TSS data obtained from Schizosaccharomyces japonicus grown in YPD medium replicate 2 |
| SjapconsensusClusters.txt | Download | Core promoter data obtained from Schizosaccharomyces japonicus grown in YPD medium |
| Genome | ||
| Schizosaccharomyces_japonicus.GCA_000149845.2.39.gtf | Download | Annotations for Schizosaccharomyces japonicus from Ensembl |
| Schizosaccharomyces_japonicus.GCA_000149845.2.dna.toplevel.genome.fa | Download | Reference genome sequence for Schizosaccharomyces japonicus from Ensembl |
| File Name | Download Link | Description |
|---|---|---|
| Spom1.ctss | Download | Raw TSS data obtained from Schizosaccharomyces pombe grown in YPD medium replicate 1 |
| Spom2.ctss | Download | Raw TSS data obtained from Schizosaccharomyces pombe grown in YPD medium replicate 2 |
| SpomconsensusClusters.txt | Download | Core promoter data obtained from Schizosaccharomyces pombe grown in YPD medium |
| Genome_0725 | ||
| Schizosaccharomyces_pombe.ASM294v2.31_updated_chr_names.gff3 | Download | Annotations for Schizosaccharomyces pombe from Pombase |
| Schizosaccharomyces_pombe_all_chromosomes_updated_chr_names.fa | Download | Reference genome sequence for Schizosaccharomyces pombe from Pombase |
| other_track | ||
| GSE110976 | ||
| GSE110976_EMM_exp.bw | Download | TSS data obtained from Schizosaccharomyces pombe grown in 30C Edinburgh Minimal Media (EMM2) condition |
| GSE110976_EMM_nitro.bw | Download | TSS data obtained from Schizosaccharomyces pombe grown in no nitrogen (16hours) 30C EMM2 condition |
| GSE110976_YES_H2O2.bw | Download | TSS data obtained from Schizosaccharomyces pombe grown in 30C Yeast Extract (YES) condition |
| GSE110976_YES_exp.bw | Download | TSS data obtained from Schizosaccharomyces pombe grown in 0.5mM H2O2 30C YES condition |
| GSE110976_YES_heat.bw | Download | TSS data obtained from Schizosaccharomyces pombe grown in 39C (15min) YES condition |
| Nucleosome_Occupancy | ||
| Lantermann_2010_PMID_20118936.bw | Download | Transcription factor binding sites data from Wood 2012 |
| Transcription_Factor_Binding_Sites | ||
| README.txt | Download | |
| Wood_2012_PMID_22039153.bed | Download | |
| Wood_2012_PMID_22039153_test.bed | Download |
| File Name | Download Link | Description |
|---|---|---|
| Ylip1.ctss | Download | Raw TSS data obtained from Yarrowia lipolytica grown in YPD medium replicate 1 |
| Ylip2.ctss | Download | Raw TSS data obtained from Yarrowia lipolytica grown in YPD medium replicate 2 |
| YlipconsensusClusters.txt | Download | Core promoter data obtained from Yarrowia lipolytica grown in YPD medium |
| Genome | ||
| GCF_000002525.2_ASM252v1_genomic.gff | Download | Annotations for Yarrowia lipolytica from NCBI |
| Ylipolytica_GCF_000002525.2_ASM252v1_genomic.fna | Download | Reference genome sequence for Yarrowia lipolytica from NCBI |